Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs17791786 chr3:39175004 C/T 9.51E-5 178 25.87 20.42 24.72 KM Plot
PCPG rs17803843 chr2:6729707 C/A 0.000116 175 25.77 24.52 19.87 KM Plot
PCPG rs17804091 chr2:6734032 C/G 9.46E-5 178 25.67 24.62 19.87 KM Plot
PCPG rs178058 chr22:21193604 T/C 7.0E-6 173 25.2 31.68 12.57 KM Plot
PCPG rs178073 chr22:21229802 A/G 2.24E-5 176 25.2 34.47 12.93 KM Plot
PCPG rs1781660 chr13:37655851 T/G 0.000334 175 4.17 20.47 26.57 KM Plot
PCPG rs1781661 chr13:37654790 G/A 0.000287 178 4.17 24.23 25.92 KM Plot
PCPG rs1781662 chr13:37654448 A/C 0.000312 176 4.17 24.23 25.92 KM Plot
PCPG rs17819312 chr15:56297427 G/A 7.42E-6 177 24.85 26.53 25.17 KM Plot
PCPG rs17833890 chr17:1446091 C/G 1.47E-5 175 24.53 25.87 25.17 KM Plot
PCPG rs17846970 chr2:241533512 T/A 7.15E-12 178 25.77 24.62 6.73 KM Plot
PCPG rs17846975 chr2:241534163 G/A 3.44E-5 178 25.92 20.2 10.3 KM Plot
PCPG rs17846981 chr2:241537569 T/C 3.44E-5 178 25.92 20.2 10.3 KM Plot
PCPG rs17846983 chr2:241538531 T/C 7.15E-12 178 25.77 24.62 6.73 KM Plot
PCPG rs17860115 chr21:34602305 C/A 0.000227 174 24.17 31.2 22.43 KM Plot